Index

_

__init__() (implicit_solvent_ddm.matrix_order.CycleSteps method) (implicit_solvent_ddm.restraints.FlatBottom method) (implicit_solvent_ddm.runner.IntermidateRunner method)

C

CycleSteps (class in implicit_solvent_ddm.matrix_order)

F

FlatBottom (class in implicit_solvent_ddm.restraints)

I

implicit_solvent_ddm.adaptive_restraints module implicit_solvent_ddm.alchemical module implicit_solvent_ddm.config module implicit_solvent_ddm.implicit_ddm_workflow module implicit_solvent_ddm.matrix_order module implicit_solvent_ddm.mdin module implicit_solvent_ddm.mdout module implicit_solvent_ddm.pandasmbar module

implicit_solvent_ddm.postTreatment module implicit_solvent_ddm.restraint_helper module implicit_solvent_ddm.restraints module implicit_solvent_ddm.run_endstate module implicit_solvent_ddm.runner module implicit_solvent_ddm.setup_simulations module implicit_solvent_ddm.simulations module implicit_solvent_ddm.workflow_phases module IntermidateRunner (class in implicit_solvent_ddm.runner)

M

module implicit_solvent_ddm.adaptive_restraints implicit_solvent_ddm.alchemical implicit_solvent_ddm.config implicit_solvent_ddm.implicit_ddm_workflow implicit_solvent_ddm.matrix_order implicit_solvent_ddm.mdin implicit_solvent_ddm.mdout implicit_solvent_ddm.pandasmbar implicit_solvent_ddm.postTreatment implicit_solvent_ddm.restraint_helper implicit_solvent_ddm.restraints implicit_solvent_ddm.run_endstate implicit_solvent_ddm.runner implicit_solvent_ddm.setup_simulations implicit_solvent_ddm.simulations implicit_solvent_ddm.workflow_phases