implicit_solvent_ddm.simulations

Classes to setup different types of simulations (i.e. remd, basic md).

Functions

workflow(job, parm_file, coord_files)
write_empty_restraint(job)
write_mdin(job, mdin_type)

Classes

Calculation(executable, mpi_command, ...[, ...])	Base calculation class.
ExtractTrajectories(solute_topology, ...[, ...])	This class handles target temperature trajectory extraction from Replica Exchange Molecular Dynamic Simulation
REMDSimulation(executable, mpi_command, ...)	This class handles Replica Exchange Molecular Dynamic calculations
Simulation(executable, mpi_command, ...[, ...])	Setup a general sander MD simulation.