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Implicit_Solvent_DDM documentation
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Implicit_Solvent_DDM documentation

Getting Started

  • Installation
  • Implementation Details
  • DDM Workflow Structure
  • YAML Config Syntax

Examples

  • Running Basic MD at the endstate simulation
  • Running REMD at the endstate simulation
  • User Provided Endstate Simulation
  • GPU-Accelerated MD Simulation Example

Software Documentation

  • API Documentation
    • implicit_solvent_ddm.implicit_ddm_workflow
    • implicit_solvent_ddm.workflow_phases
    • implicit_solvent_ddm.setup_simulations
    • implicit_solvent_ddm.runner.IntermidateRunner
    • implicit_solvent_ddm.run_endstate
    • implicit_solvent_ddm.config
    • implicit_solvent_ddm.matrix_order.CycleSteps
    • implicit_solvent_ddm.adaptive_restraints
    • implicit_solvent_ddm.alchemical
    • implicit_solvent_ddm.mdin
    • implicit_solvent_ddm.mdout
    • implicit_solvent_ddm.pandasmbar
    • implicit_solvent_ddm.postTreatment
    • implicit_solvent_ddm.restraint_helper
    • implicit_solvent_ddm.restraints
    • implicit_solvent_ddm.simulations
  • Updates and Changelog
  • Version 1.1.2 - Critical GPU Bug Fixes
  • Version 1.1.1 - GPU Acceleration Support
  • Version 1.0.0 - Initial Stable Release
  • About this package
Implicit_Solvent_DDM documentation
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Overview: module code

All modules for which code is available

  • implicit_solvent_ddm.matrix_order
  • implicit_solvent_ddm.restraints
  • implicit_solvent_ddm.runner

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